Last updated on 2024-11-14 03:49:09 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 3.51 | 31.30 | 34.81 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 2.31 | 23.16 | 25.47 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 56.68 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 50.62 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.3 | 5.00 | 69.00 | 74.00 | ERROR | |
| r-patched-linux-x86_64 | 2.0.3 | 3.14 | 29.49 | 32.63 | ERROR | |
| r-release-linux-x86_64 | 2.0.3 | 2.48 | 29.45 | 31.93 | ERROR | |
| r-release-macos-arm64 | 2.0.3 | 31.00 | OK | |||
| r-release-macos-x86_64 | 2.0.3 | 41.00 | OK | |||
| r-release-windows-x86_64 | 2.0.3 | 5.00 | 69.00 | 74.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.0.3 | 34.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.3 | 54.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.3 | 6.00 | 72.00 | 78.00 | ERROR |
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gnr_simple
> ### Title: checks species names against a variety of online databases
> ### supports fuzzy partial matching, using the Global Names Resolver
> ### (https://resolver.globalnames.org/)
> ### Aliases: gnr_simple
>
> ### ** Examples
>
> #Visit https://resolver.globalnames.org/data_sources to see all possible
> #data sources for name checking.
> name<-"Aphanazomenon flos-aquae"
> #sourceid=3 for ITIS database,195 for Algaebase
> gnr_simple(name,sourceid=3) #search for ITIS matches
Warning: Failed to open 'http://resolver.globalnames.org/name_resolvers.json?names=Aphanazomenon+flos-aquae&best_match_only=true&data_source_ids=3': The requested URL returned error: 500
Error: lexical error: invalid char in json text.
Error in readLines(con, warn =
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> ### Name: gnr_simple
> ### Title: checks species names against a variety of online databases
> ### supports fuzzy partial matching, using the Global Names Resolver
> ### (https://resolver.globalnames.org/)
> ### Aliases: gnr_simple
>
> ### ** Examples
>
> #Visit https://resolver.globalnames.org/data_sources to see all possible
> #data sources for name checking.
> name<-"Aphanazomenon flos-aquae"
> #sourceid=3 for ITIS database,195 for Algaebase
> gnr_simple(name,sourceid=3) #search for ITIS matches
Warning: Failed to open 'http://resolver.globalnames.org/name_resolvers.json?names=Aphanazomenon+flos-aquae&best_match_only=true&data_source_ids=3': The requested URL returned error: 500
Error: lexical error: invalid char in json text.
Error in readLines(con, warn =
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> ### Name: gnr_df
> ### Title: Wrapper function to apply gnr_simple across a data.frame or list
> ### of species names
> ### Aliases: gnr_df
>
> ### ** Examples
>
> data(lakegeneva)
> #example dataset with 50 rows
>
> lakegeneva<- genus_species_extract(lakegeneva,'phyto_name')
> lakegeneva$genus_species <- trimws(paste(lakegeneva$genus,
+ lakegeneva$species))
>
> #checking for matches from all GNRS sources:
> lakegeneva.namematches <- gnr_df(lakegeneva,"genus_species")
Error: lexical error: invalid char in json text.
Error in readLines(con, warn =
(right here) ------^
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc