Last updated on 2024-07-12 15:53:20 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ebvcube | 4 | 2 | 7 |
Current CRAN status: ERROR: 4, NOTE: 2, OK: 7
Version: 0.2.3
Check: data for non-ASCII characters
Result: NOTE
Note: found 2 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘ebvcube-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ebv_download
> ### Title: Download an EBV netCDF file
> ### Aliases: ebv_download
>
> ### ** Examples
>
> #get all available datasets
> datasets <- ebv_download()
Warning in open.connection(con, "rb") :
cannot open URL 'https://portal.geobon.org/api/v1/datasets': HTTP status was '404 Not Found'
Error in open.connection(con, "rb") :
cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Calls: ebv_download ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/66s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(ebvcube)
>
> test_check("ebvcube")
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[ FAIL 3 | WARN 14 | SKIP 0 | PASS 194 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-download.R:4:3'): test ebv_download ID=numeric ─────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Backtrace:
▆
1. └─ebvcube::ebv_download(27, dir) at test-download.R:4:3
2. └─jsonlite::fromJSON("https://portal.geobon.org/api/v1/datasets")
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
── Error ('test-download.R:10:3'): test ebv_download ID=doi ────────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Backtrace:
▆
1. └─ebvcube::ebv_download("10.25829/f2rdp4", dir) at test-download.R:10:3
2. └─jsonlite::fromJSON("https://portal.geobon.org/api/v1/datasets")
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
── Error ('test-download.R:16:3'): test ebv_download ID=title ──────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Backtrace:
▆
1. └─ebvcube::ebv_download(...) at test-download.R:16:3
2. └─jsonlite::fromJSON("https://portal.geobon.org/api/v1/datasets")
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
[ FAIL 3 | WARN 14 | SKIP 0 | PASS 194 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘HDF5Array’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in 'ebvcube-Ex.R' failed
The error most likely occurred in:
> ### Name: ebv_download
> ### Title: Download an EBV netCDF file
> ### Aliases: ebv_download
>
> ### ** Examples
>
> #get all available datasets
> datasets <- ebv_download()
Warning in open.connection(con, "rb") :
cannot open URL 'https://portal.geobon.org/api/v1/datasets': HTTP status was '404 Not Found'
Error in open.connection(con, "rb") :
cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Calls: ebv_download ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [42s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(ebvcube)
>
> test_check("ebvcube")
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file. For more info on a specific datacube, define the metric and scenario OR datacubepath."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[1] "Giving the properties for the file and a specified datacube."
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 194 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-download.R:4:3'): test ebv_download ID=numeric ─────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Backtrace:
▆
1. └─ebvcube::ebv_download(27, dir) at test-download.R:4:3
2. └─jsonlite::fromJSON("https://portal.geobon.org/api/v1/datasets")
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
── Error ('test-download.R:10:3'): test ebv_download ID=doi ────────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Backtrace:
▆
1. └─ebvcube::ebv_download("10.25829/f2rdp4", dir) at test-download.R:10:3
2. └─jsonlite::fromJSON("https://portal.geobon.org/api/v1/datasets")
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
── Error ('test-download.R:16:3'): test ebv_download ID=title ──────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://portal.geobon.org/api/v1/datasets'
Backtrace:
▆
1. └─ebvcube::ebv_download(...) at test-download.R:16:3
2. └─jsonlite::fromJSON("https://portal.geobon.org/api/v1/datasets")
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_con(txt, bigint_as_char)
6. ├─base::open(con, "rb")
7. └─base::open.connection(con, "rb")
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 194 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64