Last updated on 2024-06-16 11:58:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 15.69 | 244.38 | 260.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 10.27 | 166.62 | 176.89 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 333.00 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 317.57 | NOTE | |||
| r-devel-windows-x86_64 | 1.3.0 | 12.00 | 172.00 | 184.00 | OK | |
| r-patched-linux-x86_64 | 1.3.0 | 15.31 | 234.63 | 249.94 | OK | |
| r-release-linux-x86_64 | 1.3.0 | 9.12 | 234.08 | 243.20 | OK | |
| r-release-macos-arm64 | 1.3.0 | 89.00 | OK | |||
| r-release-macos-x86_64 | 1.3.0 | 140.00 | OK | |||
| r-release-windows-x86_64 | 1.3.0 | 14.00 | 173.00 | 187.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.0 | 101.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.0 | 220.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.0 | 17.00 | 228.00 | 245.00 | OK |
Version: 1.3.0
Check: examples
Result: ERROR
Running examples in ‘palaeoverse-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: axis_geo
> ### Title: Add an axis with a geological timescale
> ### Aliases: axis_geo axis_geo_phylo
>
> ### ** Examples
>
> # track user par
> oldpar <- par(no.readonly = TRUE)
> # single scale on bottom
> par(mar = c(6.1, 4.1, 4.1, 2.1)) # modify margin
> plot(0:100, axes = FALSE, xlim = c(100, 0), ylim = c(100, 0),
+ xlab = NA, ylab = "Depth (m)")
> box()
> axis(2)
> axis_geo(side = 1, intervals = "period")
> # the line argument here depends on the absolute size of the plot
> title(xlab = "Time (Ma)", line = 4)
>
> # stack multiple scales, abbreviate only one set of labels
> par(mar = c(7.1, 4.1, 4.1, 2.1)) # further expand bottom margin
> plot(0:100, axes = FALSE, xlim = c(100, 0), ylim = c(100, 0),
+ xlab = NA, ylab = "Depth (m)")
> box()
> axis(2)
> axis_geo(side = 1, intervals = list("epoch", "period"),
+ abbr = list(TRUE, FALSE))
> # the line argument here depends on the absolute size of the plot
> title(xlab = "Time (Ma)", line = 6)
>
> # scale with MacroStrat intervals
> par(mar = c(6.1, 4.1, 4.1, 2.1)) # modify margin
> plot(0:30, axes = FALSE, xlim = c(30, 0), ylim = c(30, 0),
+ xlab = NA, ylab = "Depth (m)")
> box()
> axis(2)
> axis_geo(side = 1, intervals = "North American land mammal ages")
Warning in open.connection(file, "rt") :
URL 'https://macrostrat.org/api/v2/defs/intervals?format=csv×cale=North%20American%20land%20mammal%20ages': Timeout of 60 seconds was reached
Error: `name` does not match a built-in or Macrostrat time scale.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/203s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(palaeoverse)
>
> test_check("palaeoverse")
Loading required package: ape
Loading required package: maps
Presence of occurrences falling on boundaries detected.
Occurrences assigned to upper bin.
Average spacing between adjacent cells in the primary grid was set to 274.09 km.
H3 resolution: 2
Average spacing between adjacent cells in the primary grid was set to 725.17 km.
H3 resolution: 1
Average spacing between adjacent cells in the primary grid was set to 274.09 km.
H3 resolution: 2
Average spacing between adjacent cells in the primary grid was set to 725.17 km.
H3 resolution: 1
Bin size set to 12 degrees to fit latitudinal range.
Bin size set to 12 degrees to fit latitudinal range.
Target equal length time bins was set to 10.02 Myr.
Generated time bins have a mean length of 10.82 Myr and a standard deviation of 2.41 Myr.
Target equal length time bins was set to 6.01 Myr.
Generated time bins have a mean length of 7.31 Myr and a standard deviation of 2.98 Myr.
Target equal length time bins was set to 10.02 Myr.
Generated time bins have a mean length of 10.61 Myr and a standard deviation of 2.52 Myr.
Target equal length time bins was set to 20.13 Myr.
Generated time bins have a mean length of 50.33 Myr and a standard deviation of 23.5 Myr.
Target equal length time bins was set to 10.02 Myr.
Generated time bins have a mean length of 10.82 Myr and a standard deviation of 2.41 Myr.
Target equal length time bins was set to 49.18 Myr.
Generated time bins have a mean length of 49.18 Myr and a standard deviation of 3.18 Myr.
Target equal length time bins was set to 24.59 Myr.
Generated time bins have a mean length of 24.59 Myr and a standard deviation of 3.08 Myr.
Target equal length time bins was set to 13.25 Myr.
Generated time bins have a mean length of 13.25 Myr and a standard deviation of 4.11 Myr.
[ FAIL 1 | WARN 1 | SKIP 12 | PASS 295 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-axis_geo.R:2:3', 'test-axis_geo.R:15:3',
'test-axis_geo.R:29:3', 'test-axis_geo.R:72:3', 'test-palaeorotate.R:2:3',
'test-palaeorotate.R:85:3', 'test-tax_range_strat.R:26:3',
'test-tax_range_strat.R:38:3', 'test-tax_range_strat.R:50:3',
'test-tax_range_strat.R:62:3', 'test-tax_range_strat.R:74:3',
'test-time_bins.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-axis_geo.R:61:5'): axis_geo() can be used on multiple sides ────
Error: `name` does not match a built-in or Macrostrat time scale.
Backtrace:
▆
1. └─vdiffr::expect_doppelganger(...) at test-axis_geo.R:46:3
2. └─vdiffr (local) writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.function(plot, title)
5. └─palaeoverse (local) p()
6. └─palaeoverse::axis_geo(...) at test-axis_geo.R:61:5
7. └─palaeoverse::time_bins(scale = scale_intervals)
8. └─base::tryCatch(...)
9. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. └─value[[3L]](cond)
[ FAIL 1 | WARN 1 | SKIP 12 | PASS 295 ]
Deleting unused snapshots:
• axis_geo/axis-geo-with-backwards-ultrametric-tree.svg
• axis_geo/axis-geo-with-downwards-fossil-tree.svg
• axis_geo/axis-geo-with-fossil-tree.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.0
Check: data for non-ASCII characters
Result: NOTE
Note: found 314 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc