CRAN Package Check Results for Maintainer ‘Paul Johnson <pauljohn at ku.edu>’

Last updated on 2024-07-13 05:49:48 CEST.

Package ERROR NOTE OK
kutils 2 11
rockchalk 11 2
stationery 6 7

Package kutils

Current CRAN status: NOTE: 2, OK: 11

Version: 1.73
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘RUnit’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package rockchalk

Current CRAN status: NOTE: 11, OK: 2

Version: 1.8.157
Check: Rd files
Result: NOTE checkRd: (-1) descriptiveTable.Rd:18: Lost braces 18 | other object type that does not fail in code{model.frame(object)}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.8.157
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'car', 'HH' Flavor: r-oldrel-macos-x86_64

Version: 1.8.157
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘HH’ Flavor: r-oldrel-macos-x86_64

Version: 1.8.157
Check: re-building of vignette outputs
Result: NOTE Error(s) in re-building vignettes: --- re-building ‘Rchaeology.Rnw’ using Sweave Error: processing vignette 'Rchaeology.Rnw' failed with diagnostics: Running 'texi2dvi' on 'Rchaeology.tex' failed. LaTeX errors: ! LaTeX Error: File `relsize.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.21 \RequirePackage [T1]{fontenc}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building 'Rchaeology.Rnw' --- re-building ‘Rstyle.Rnw’ using Sweave Error: processing vignette 'Rstyle.Rnw' failed with diagnostics: Running 'texi2dvi' on 'Rstyle.tex' failed. LaTeX errors: ! LaTeX Error: File `relsize.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.21 \RequirePackage [T1]{fontenc}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building 'Rstyle.Rnw' --- re-building ‘outreg.Rnw’ using Sweave Loading required package: car Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'car' Loading required package: car Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'car' Loading required package: car Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'car' Error: processing vignette 'outreg.Rnw' failed with diagnostics: Running 'texi2dvi' on 'outreg.tex' failed. LaTeX errors: ! LaTeX Error: File `relsize.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.318 ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘outreg.Rnw’ --- re-building ‘rockchalk.Rnw’ using Sweave Warning: Using formula(x) is deprecated when x is a character vector of length > 1. Consider formula(paste(x, collapse = " ")) instead. Error: processing vignette 'rockchalk.Rnw' failed with diagnostics: Running 'texi2dvi' on 'rockchalk.tex' failed. LaTeX errors: ! LaTeX Error: File `relsize.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.21 \RequirePackage [T1]{fontenc}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building 'rockchalk.Rnw' SUMMARY: processing the following files failed: ‘Rchaeology.Rnw’ ‘Rstyle.Rnw’ ‘outreg.Rnw’ ‘rockchalk.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64

Package stationery

Current CRAN status: ERROR: 6, OK: 7

Additional issues

M1mac

Version: 1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘HTML_special_features.Rmd’ using rmarkdown ** Processing: tmpout/p-fig-1.png 960x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11504 bytes Input file size = 12374 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10193 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 Output IDAT size = 10126 bytes (1378 bytes decrease) Output file size = 10204 bytes (2170 bytes = 17.54% decrease) ** Processing: tmpout/p-xsummary2-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15399 bytes Input file size = 16269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 Output IDAT size = 12829 bytes (2570 bytes decrease) Output file size = 12907 bytes (3362 bytes = 20.67% decrease) ** Processing: tmpout/p-chunk50-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10915 bytes Input file size = 11785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9194 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 Output IDAT size = 9193 bytes (1722 bytes decrease) Output file size = 9271 bytes (2514 bytes = 21.33% decrease) ** Processing: tmpout/p-chunk65-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9593 bytes Input file size = 10463 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7967 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 Output IDAT size = 7946 bytes (1647 bytes decrease) Output file size = 8024 bytes (2439 bytes = 23.31% decrease) ** Processing: tmpout/p-chunk75-1.png 960x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12285 bytes Input file size = 13155 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 Output IDAT size = 10613 bytes (1672 bytes decrease) Output file size = 10691 bytes (2464 bytes = 18.73% decrease) ** Processing: tmpout/p-chunk76-1.png 768x768 pixels, 8 bits/pixel, 1 color in palette Reducing image to 1 bit/pixel, 1 color in palette Input IDAT size = 595 bytes Input file size = 688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 95 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 Output IDAT size = 95 bytes (500 bytes decrease) Output file size = 188 bytes (500 bytes = 72.67% decrease) ** Processing: tmpout/p-chunk76-2.png 768x768 pixels, 8 bits/pixel, 14 colors in palette Reducing image to 4 bits/pixel, 14 colors in palette Input IDAT size = 2095 bytes Input file size = 2227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1218 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1218 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1127 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (968 bytes decrease) Output file size = 1259 bytes (968 bytes = 43.47% decrease) ** Processing: tmpout/p-chunk76-3.png 768x768 pixels, 8 bits/pixel, 226 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3658 bytes Input file size = 4426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 2876 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 Output IDAT size = 2872 bytes (786 bytes decrease) Output file size = 2950 bytes (1476 bytes = 33.35% decrease) ** Processing: tmpout/p-chunk76-4.png 768x768 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5284 bytes Input file size = 6124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 Output IDAT size = 4519 bytes (765 bytes decrease) Output file size = 4597 bytes (1527 bytes = 24.93% decrease) ** Processing: tmpout/p-chunk76-5.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5439 bytes Input file size = 6288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 Output IDAT size = 4659 bytes (780 bytes decrease) Output file size = 4737 bytes (1551 bytes = 24.67% decrease) ** Processing: tmpout/p-chunk76-6.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5599 bytes Input file size = 6448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 Output IDAT size = 4780 bytes (819 bytes decrease) Output file size = 4858 bytes (1590 bytes = 24.66% decrease) ** Processing: tmpout/p-chunk76-7.png 768x768 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6561 bytes Input file size = 7413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 Output IDAT size = 5755 bytes (806 bytes decrease) Output file size = 5833 bytes (1580 bytes = 21.31% decrease) ** Processing: tmpout/p-chunk76-8.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7667 bytes Input file size = 8522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6694 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 Output IDAT size = 6691 bytes (976 bytes decrease) Output file size = 6769 bytes (1753 bytes = 20.57% decrease) ** Processing: tmpout/p-chunk76-9.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8354 bytes Input file size = 9221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7258 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 Output IDAT size = 7256 bytes (1098 bytes decrease) Output file size = 7334 bytes (1887 bytes = 20.46% decrease) ** Processing: tmpout/p-chunk76-10.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11109 bytes Input file size = 11979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 Output IDAT size = 9801 bytes (1308 bytes decrease) Output file size = 9879 bytes (2100 bytes = 17.53% decrease) ** Processing: tmpout/p-chunk76-11.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11160 bytes Input file size = 12030 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 Output IDAT size = 9840 bytes (1320 bytes decrease) Output file size = 9918 bytes (2112 bytes = 17.56% decrease) --- finished re-building ‘HTML_special_features.Rmd’ --- re-building ‘Rmarkdown.Rmd’ using rmarkdown --- finished re-building ‘Rmarkdown.Rmd’ --- re-building ‘code_chunks.Rmd’ using rmarkdown The magick package is required to crop "tmpout/p-chunk65-1.png" but not available. ** Processing: tmpout/p-chunk65-1.png 288x216 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 2x8 bits/pixel, grayscale+alpha Input IDAT size = 4546 bytes Input file size = 4624 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3115 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 Output IDAT size = 2969 bytes (1577 bytes decrease) Output file size = 3047 bytes (1577 bytes = 34.10% decrease) ! Undefined control sequence. l.708 \pandocbounded {\includegraphics[keepaspectratio]{tmpout/p-chunk50-1.... Error: processing vignette 'code_chunks.Rmd' failed with diagnostics: LaTeX failed to compile /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stationery.Rcheck/vign_test/stationery/vignettes/code_chunks.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See code_chunks.log for more info. --- failed re-building ‘code_chunks.Rmd’ --- re-building ‘stationery.Rnw’ using Sweave --- finished re-building ‘stationery.Rnw’ SUMMARY: processing the following file failed: ‘code_chunks.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘HTML_special_features.Rmd’ using rmarkdown ** Processing: tmpout/p-fig-1.png 960x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11504 bytes Input file size = 12374 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10193 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 Output IDAT size = 10126 bytes (1378 bytes decrease) Output file size = 10204 bytes (2170 bytes = 17.54% decrease) ** Processing: tmpout/p-xsummary2-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15399 bytes Input file size = 16269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 Output IDAT size = 12829 bytes (2570 bytes decrease) Output file size = 12907 bytes (3362 bytes = 20.67% decrease) ** Processing: tmpout/p-chunk50-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10915 bytes Input file size = 11785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9194 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 Output IDAT size = 9193 bytes (1722 bytes decrease) Output file size = 9271 bytes (2514 bytes = 21.33% decrease) ** Processing: tmpout/p-chunk65-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9593 bytes Input file size = 10463 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7967 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 Output IDAT size = 7946 bytes (1647 bytes decrease) Output file size = 8024 bytes (2439 bytes = 23.31% decrease) ** Processing: tmpout/p-chunk75-1.png 960x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12285 bytes Input file size = 13155 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 Output IDAT size = 10613 bytes (1672 bytes decrease) Output file size = 10691 bytes (2464 bytes = 18.73% decrease) ** Processing: tmpout/p-chunk76-1.png 768x768 pixels, 8 bits/pixel, 1 color in palette Reducing image to 1 bit/pixel, 1 color in palette Input IDAT size = 595 bytes Input file size = 688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 95 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 Output IDAT size = 95 bytes (500 bytes decrease) Output file size = 188 bytes (500 bytes = 72.67% decrease) ** Processing: tmpout/p-chunk76-2.png 768x768 pixels, 8 bits/pixel, 14 colors in palette Reducing image to 4 bits/pixel, 14 colors in palette Input IDAT size = 2095 bytes Input file size = 2227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1218 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1218 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1127 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (968 bytes decrease) Output file size = 1259 bytes (968 bytes = 43.47% decrease) ** Processing: tmpout/p-chunk76-3.png 768x768 pixels, 8 bits/pixel, 226 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3658 bytes Input file size = 4426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 2876 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 Output IDAT size = 2872 bytes (786 bytes decrease) Output file size = 2950 bytes (1476 bytes = 33.35% decrease) ** Processing: tmpout/p-chunk76-4.png 768x768 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5284 bytes Input file size = 6124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 Output IDAT size = 4519 bytes (765 bytes decrease) Output file size = 4597 bytes (1527 bytes = 24.93% decrease) ** Processing: tmpout/p-chunk76-5.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5439 bytes Input file size = 6288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 Output IDAT size = 4659 bytes (780 bytes decrease) Output file size = 4737 bytes (1551 bytes = 24.67% decrease) ** Processing: tmpout/p-chunk76-6.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5599 bytes Input file size = 6448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 Output IDAT size = 4780 bytes (819 bytes decrease) Output file size = 4858 bytes (1590 bytes = 24.66% decrease) ** Processing: tmpout/p-chunk76-7.png 768x768 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6561 bytes Input file size = 7413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 Output IDAT size = 5755 bytes (806 bytes decrease) Output file size = 5833 bytes (1580 bytes = 21.31% decrease) ** Processing: tmpout/p-chunk76-8.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7667 bytes Input file size = 8522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6694 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 Output IDAT size = 6691 bytes (976 bytes decrease) Output file size = 6769 bytes (1753 bytes = 20.57% decrease) ** Processing: tmpout/p-chunk76-9.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8354 bytes Input file size = 9221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7258 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 Output IDAT size = 7256 bytes (1098 bytes decrease) Output file size = 7334 bytes (1887 bytes = 20.46% decrease) ** Processing: tmpout/p-chunk76-10.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11109 bytes Input file size = 11979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 Output IDAT size = 9801 bytes (1308 bytes decrease) Output file size = 9879 bytes (2100 bytes = 17.53% decrease) ** Processing: tmpout/p-chunk76-11.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11160 bytes Input file size = 12030 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 Output IDAT size = 9840 bytes (1320 bytes decrease) Output file size = 9918 bytes (2112 bytes = 17.56% decrease) --- finished re-building ‘HTML_special_features.Rmd’ --- re-building ‘Rmarkdown.Rmd’ using rmarkdown --- finished re-building ‘Rmarkdown.Rmd’ --- re-building ‘code_chunks.Rmd’ using rmarkdown The magick package is required to crop "tmpout/p-chunk65-1.png" but not available. ** Processing: tmpout/p-chunk65-1.png 288x216 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 2x8 bits/pixel, grayscale+alpha Input IDAT size = 4546 bytes Input file size = 4624 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3115 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 Output IDAT size = 2969 bytes (1577 bytes decrease) Output file size = 3047 bytes (1577 bytes = 34.10% decrease) ! Undefined control sequence. l.708 \pandocbounded {\includegraphics[keepaspectratio]{tmpout/p-chunk50-1.... Error: processing vignette 'code_chunks.Rmd' failed with diagnostics: LaTeX failed to compile /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/stationery.Rcheck/vign_test/stationery/vignettes/code_chunks.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See code_chunks.log for more info. --- failed re-building ‘code_chunks.Rmd’ --- re-building ‘stationery.Rnw’ using Sweave --- finished re-building ‘stationery.Rnw’ SUMMARY: processing the following file failed: ‘code_chunks.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘HTML_special_features.Rmd’ using rmarkdown ** Processing: tmpout/p-fig-1.png 960x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11504 bytes Input file size = 12374 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10193 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 Output IDAT size = 10126 bytes (1378 bytes decrease) Output file size = 10204 bytes (2170 bytes = 17.54% decrease) ** Processing: tmpout/p-xsummary2-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15399 bytes Input file size = 16269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 Output IDAT size = 12829 bytes (2570 bytes decrease) Output file size = 12907 bytes (3362 bytes = 20.67% decrease) ** Processing: tmpout/p-chunk50-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10915 bytes Input file size = 11785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9194 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 Output IDAT size = 9193 bytes (1722 bytes decrease) Output file size = 9271 bytes (2514 bytes = 21.33% decrease) ** Processing: tmpout/p-chunk65-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9593 bytes Input file size = 10463 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7967 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 Output IDAT size = 7946 bytes (1647 bytes decrease) Output file size = 8024 bytes (2439 bytes = 23.31% decrease) ** Processing: tmpout/p-chunk75-1.png 960x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12252 bytes Input file size = 13122 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10583 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10583 Output IDAT size = 10583 bytes (1669 bytes decrease) Output file size = 10661 bytes (2461 bytes = 18.75% decrease) ** Processing: tmpout/p-chunk76-1.png 768x768 pixels, 8 bits/pixel, 1 color in palette Reducing image to 1 bit/pixel, 1 color in palette Input IDAT size = 595 bytes Input file size = 688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 95 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 Output IDAT size = 95 bytes (500 bytes decrease) Output file size = 188 bytes (500 bytes = 72.67% decrease) ** Processing: tmpout/p-chunk76-2.png 768x768 pixels, 8 bits/pixel, 14 colors in palette Reducing image to 4 bits/pixel, 14 colors in palette Input IDAT size = 2095 bytes Input file size = 2227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1218 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1218 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1127 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (968 bytes decrease) Output file size = 1259 bytes (968 bytes = 43.47% decrease) ** Processing: tmpout/p-chunk76-3.png 768x768 pixels, 8 bits/pixel, 226 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3658 bytes Input file size = 4426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 2876 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 Output IDAT size = 2872 bytes (786 bytes decrease) Output file size = 2950 bytes (1476 bytes = 33.35% decrease) ** Processing: tmpout/p-chunk76-4.png 768x768 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5284 bytes Input file size = 6124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 Output IDAT size = 4519 bytes (765 bytes decrease) Output file size = 4597 bytes (1527 bytes = 24.93% decrease) ** Processing: tmpout/p-chunk76-5.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5439 bytes Input file size = 6288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 Output IDAT size = 4659 bytes (780 bytes decrease) Output file size = 4737 bytes (1551 bytes = 24.67% decrease) ** Processing: tmpout/p-chunk76-6.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5599 bytes Input file size = 6448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 Output IDAT size = 4780 bytes (819 bytes decrease) Output file size = 4858 bytes (1590 bytes = 24.66% decrease) ** Processing: tmpout/p-chunk76-7.png 768x768 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6561 bytes Input file size = 7413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 Output IDAT size = 5755 bytes (806 bytes decrease) Output file size = 5833 bytes (1580 bytes = 21.31% decrease) ** Processing: tmpout/p-chunk76-8.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7667 bytes Input file size = 8522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6694 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 Output IDAT size = 6691 bytes (976 bytes decrease) Output file size = 6769 bytes (1753 bytes = 20.57% decrease) ** Processing: tmpout/p-chunk76-9.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8354 bytes Input file size = 9221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7258 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 Output IDAT size = 7256 bytes (1098 bytes decrease) Output file size = 7334 bytes (1887 bytes = 20.46% decrease) ** Processing: tmpout/p-chunk76-10.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11050 bytes Input file size = 11917 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9780 Output IDAT size = 9780 bytes (1270 bytes decrease) Output file size = 9858 bytes (2059 bytes = 17.28% decrease) ** Processing: tmpout/p-chunk76-11.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11104 bytes Input file size = 11971 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9816 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9816 Output IDAT size = 9816 bytes (1288 bytes decrease) Output file size = 9894 bytes (2077 bytes = 17.35% decrease) --- finished re-building ‘HTML_special_features.Rmd’ --- re-building ‘Rmarkdown.Rmd’ using rmarkdown --- finished re-building ‘Rmarkdown.Rmd’ --- re-building ‘code_chunks.Rmd’ using rmarkdown The magick package is required to crop "tmpout/p-chunk65-1.png" but not available. ** Processing: tmpout/p-chunk65-1.png 288x216 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 2x8 bits/pixel, grayscale+alpha Input IDAT size = 4546 bytes Input file size = 4624 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3115 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 Output IDAT size = 2969 bytes (1577 bytes decrease) Output file size = 3047 bytes (1577 bytes = 34.10% decrease) Warning in system2("tlmgr", args, ...) : running command ''tlmgr' search --file --global '/ts1aer.fd'' had status 123 Warning in system2("tlmgr", args, ...) : running command ''tlmgr' search --file --global '/l3backend-pdftex.def'' had status 123 ! Undefined control sequence. l.708 \pandocbounded {\includegraphics[keepaspectratio]{tmpout/p-chunk50-1.... Error: processing vignette 'code_chunks.Rmd' failed with diagnostics: LaTeX failed to compile /data/gannet/ripley/R/packages/tests-clang/stationery.Rcheck/vign_test/stationery/vignettes/code_chunks.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See code_chunks.log for more info. --- failed re-building ‘code_chunks.Rmd’ --- re-building ‘stationery.Rnw’ using Sweave --- finished re-building ‘stationery.Rnw’ SUMMARY: processing the following file failed: ‘code_chunks.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘HTML_special_features.Rmd’ using rmarkdown ** Processing: tmpout/p-fig-1.png 960x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11504 bytes Input file size = 12374 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10193 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 Output IDAT size = 10126 bytes (1378 bytes decrease) Output file size = 10204 bytes (2170 bytes = 17.54% decrease) ** Processing: tmpout/p-xsummary2-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15399 bytes Input file size = 16269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 Output IDAT size = 12829 bytes (2570 bytes decrease) Output file size = 12907 bytes (3362 bytes = 20.67% decrease) ** Processing: tmpout/p-chunk50-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10915 bytes Input file size = 11785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9194 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 Output IDAT size = 9193 bytes (1722 bytes decrease) Output file size = 9271 bytes (2514 bytes = 21.33% decrease) ** Processing: tmpout/p-chunk65-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9593 bytes Input file size = 10463 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7967 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 Output IDAT size = 7946 bytes (1647 bytes decrease) Output file size = 8024 bytes (2439 bytes = 23.31% decrease) ** Processing: tmpout/p-chunk75-1.png 960x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12252 bytes Input file size = 13122 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10583 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10583 Output IDAT size = 10583 bytes (1669 bytes decrease) Output file size = 10661 bytes (2461 bytes = 18.75% decrease) ** Processing: tmpout/p-chunk76-1.png 768x768 pixels, 8 bits/pixel, 1 color in palette Reducing image to 1 bit/pixel, 1 color in palette Input IDAT size = 595 bytes Input file size = 688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 95 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 Output IDAT size = 95 bytes (500 bytes decrease) Output file size = 188 bytes (500 bytes = 72.67% decrease) ** Processing: tmpout/p-chunk76-2.png 768x768 pixels, 8 bits/pixel, 14 colors in palette Reducing image to 4 bits/pixel, 14 colors in palette Input IDAT size = 2095 bytes Input file size = 2227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1218 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1218 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1127 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (968 bytes decrease) Output file size = 1259 bytes (968 bytes = 43.47% decrease) ** Processing: tmpout/p-chunk76-3.png 768x768 pixels, 8 bits/pixel, 226 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3658 bytes Input file size = 4426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 2876 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 Output IDAT size = 2872 bytes (786 bytes decrease) Output file size = 2950 bytes (1476 bytes = 33.35% decrease) ** Processing: tmpout/p-chunk76-4.png 768x768 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5284 bytes Input file size = 6124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 Output IDAT size = 4519 bytes (765 bytes decrease) Output file size = 4597 bytes (1527 bytes = 24.93% decrease) ** Processing: tmpout/p-chunk76-5.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5439 bytes Input file size = 6288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 Output IDAT size = 4659 bytes (780 bytes decrease) Output file size = 4737 bytes (1551 bytes = 24.67% decrease) ** Processing: tmpout/p-chunk76-6.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5599 bytes Input file size = 6448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 Output IDAT size = 4780 bytes (819 bytes decrease) Output file size = 4858 bytes (1590 bytes = 24.66% decrease) ** Processing: tmpout/p-chunk76-7.png 768x768 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6561 bytes Input file size = 7413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 Output IDAT size = 5755 bytes (806 bytes decrease) Output file size = 5833 bytes (1580 bytes = 21.31% decrease) ** Processing: tmpout/p-chunk76-8.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7667 bytes Input file size = 8522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6694 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 Output IDAT size = 6691 bytes (976 bytes decrease) Output file size = 6769 bytes (1753 bytes = 20.57% decrease) ** Processing: tmpout/p-chunk76-9.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8354 bytes Input file size = 9221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7258 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 Output IDAT size = 7256 bytes (1098 bytes decrease) Output file size = 7334 bytes (1887 bytes = 20.46% decrease) ** Processing: tmpout/p-chunk76-10.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11050 bytes Input file size = 11917 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9780 Output IDAT size = 9780 bytes (1270 bytes decrease) Output file size = 9858 bytes (2059 bytes = 17.28% decrease) ** Processing: tmpout/p-chunk76-11.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11104 bytes Input file size = 11971 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9816 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9816 Output IDAT size = 9816 bytes (1288 bytes decrease) Output file size = 9894 bytes (2077 bytes = 17.35% decrease) --- finished re-building ‘HTML_special_features.Rmd’ --- re-building ‘Rmarkdown.Rmd’ using rmarkdown --- finished re-building ‘Rmarkdown.Rmd’ --- re-building ‘code_chunks.Rmd’ using rmarkdown ** Processing: tmpout/p-chunk65-1.png 247x174 pixels, 2x8 bits/pixel, grayscale+alpha Input IDAT size = 3366 bytes Input file size = 3521 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2996 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2842 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2842 Output IDAT size = 2842 bytes (524 bytes decrease) Output file size = 2997 bytes (524 bytes = 14.88% decrease) Warning in system2("tlmgr", args, ...) : running command ''tlmgr' search --file --global '/ts1aer.fd'' had status 123 Warning in system2("tlmgr", args, ...) : running command ''tlmgr' search --file --global '/l3backend-pdftex.def'' had status 123 ! Undefined control sequence. l.708 \pandocbounded {\includegraphics[keepaspectratio]{tmpout/p-chunk50-1.... Error: processing vignette 'code_chunks.Rmd' failed with diagnostics: LaTeX failed to compile /data/gannet/ripley/R/packages/tests-devel/stationery.Rcheck/vign_test/stationery/vignettes/code_chunks.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See code_chunks.log for more info. --- failed re-building ‘code_chunks.Rmd’ --- re-building ‘stationery.Rnw’ using Sweave --- finished re-building ‘stationery.Rnw’ SUMMARY: processing the following file failed: ‘code_chunks.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘HTML_special_features.Rmd’ using rmarkdown ** Processing: tmpout/p-fig-1.png 960x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11504 bytes Input file size = 12374 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10193 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 Output IDAT size = 10126 bytes (1378 bytes decrease) Output file size = 10204 bytes (2170 bytes = 17.54% decrease) ** Processing: tmpout/p-xsummary2-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15399 bytes Input file size = 16269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 Output IDAT size = 12829 bytes (2570 bytes decrease) Output file size = 12907 bytes (3362 bytes = 20.67% decrease) ** Processing: tmpout/p-chunk50-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10915 bytes Input file size = 11785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9194 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 Output IDAT size = 9193 bytes (1722 bytes decrease) Output file size = 9271 bytes (2514 bytes = 21.33% decrease) ** Processing: tmpout/p-chunk65-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9593 bytes Input file size = 10463 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7967 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 Output IDAT size = 7946 bytes (1647 bytes decrease) Output file size = 8024 bytes (2439 bytes = 23.31% decrease) ** Processing: tmpout/p-chunk75-1.png 960x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12285 bytes Input file size = 13155 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 Output IDAT size = 10613 bytes (1672 bytes decrease) Output file size = 10691 bytes (2464 bytes = 18.73% decrease) ** Processing: tmpout/p-chunk76-1.png 768x768 pixels, 8 bits/pixel, 1 color in palette Reducing image to 1 bit/pixel, 1 color in palette Input IDAT size = 595 bytes Input file size = 688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 95 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 Output IDAT size = 95 bytes (500 bytes decrease) Output file size = 188 bytes (500 bytes = 72.67% decrease) ** Processing: tmpout/p-chunk76-2.png 768x768 pixels, 8 bits/pixel, 14 colors in palette Reducing image to 4 bits/pixel, 14 colors in palette Input IDAT size = 2095 bytes Input file size = 2227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1218 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1218 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1127 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (968 bytes decrease) Output file size = 1259 bytes (968 bytes = 43.47% decrease) ** Processing: tmpout/p-chunk76-3.png 768x768 pixels, 8 bits/pixel, 226 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3658 bytes Input file size = 4426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 2876 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 Output IDAT size = 2872 bytes (786 bytes decrease) Output file size = 2950 bytes (1476 bytes = 33.35% decrease) ** Processing: tmpout/p-chunk76-4.png 768x768 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5284 bytes Input file size = 6124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 Output IDAT size = 4519 bytes (765 bytes decrease) Output file size = 4597 bytes (1527 bytes = 24.93% decrease) ** Processing: tmpout/p-chunk76-5.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5439 bytes Input file size = 6288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 Output IDAT size = 4659 bytes (780 bytes decrease) Output file size = 4737 bytes (1551 bytes = 24.67% decrease) ** Processing: tmpout/p-chunk76-6.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5599 bytes Input file size = 6448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 Output IDAT size = 4780 bytes (819 bytes decrease) Output file size = 4858 bytes (1590 bytes = 24.66% decrease) ** Processing: tmpout/p-chunk76-7.png 768x768 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6561 bytes Input file size = 7413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 Output IDAT size = 5755 bytes (806 bytes decrease) Output file size = 5833 bytes (1580 bytes = 21.31% decrease) ** Processing: tmpout/p-chunk76-8.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7667 bytes Input file size = 8522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6694 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 Output IDAT size = 6691 bytes (976 bytes decrease) Output file size = 6769 bytes (1753 bytes = 20.57% decrease) ** Processing: tmpout/p-chunk76-9.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8354 bytes Input file size = 9221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7258 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 Output IDAT size = 7256 bytes (1098 bytes decrease) Output file size = 7334 bytes (1887 bytes = 20.46% decrease) ** Processing: tmpout/p-chunk76-10.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11109 bytes Input file size = 11979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 Output IDAT size = 9801 bytes (1308 bytes decrease) Output file size = 9879 bytes (2100 bytes = 17.53% decrease) ** Processing: tmpout/p-chunk76-11.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11160 bytes Input file size = 12030 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 Output IDAT size = 9840 bytes (1320 bytes decrease) Output file size = 9918 bytes (2112 bytes = 17.56% decrease) --- finished re-building ‘HTML_special_features.Rmd’ --- re-building ‘Rmarkdown.Rmd’ using rmarkdown --- finished re-building ‘Rmarkdown.Rmd’ --- re-building ‘code_chunks.Rmd’ using rmarkdown The magick package is required to crop "tmpout/p-chunk65-1.png" but not available. ** Processing: tmpout/p-chunk65-1.png 288x216 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 2x8 bits/pixel, grayscale+alpha Input IDAT size = 4546 bytes Input file size = 4624 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3115 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 Output IDAT size = 2969 bytes (1577 bytes decrease) Output file size = 3047 bytes (1577 bytes = 34.10% decrease) ! Undefined control sequence. l.708 \pandocbounded {\includegraphics[keepaspectratio]{tmpout/p-chunk50-1.... Error: processing vignette 'code_chunks.Rmd' failed with diagnostics: LaTeX failed to compile /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/stationery.Rcheck/vign_test/stationery/vignettes/code_chunks.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See code_chunks.log for more info. --- failed re-building ‘code_chunks.Rmd’ --- re-building ‘stationery.Rnw’ using Sweave --- finished re-building ‘stationery.Rnw’ SUMMARY: processing the following file failed: ‘code_chunks.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘HTML_special_features.Rmd’ using rmarkdown ** Processing: tmpout/p-fig-1.png 960x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11504 bytes Input file size = 12374 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10193 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10126 Output IDAT size = 10126 bytes (1378 bytes decrease) Output file size = 10204 bytes (2170 bytes = 17.54% decrease) ** Processing: tmpout/p-xsummary2-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15399 bytes Input file size = 16269 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12829 Output IDAT size = 12829 bytes (2570 bytes decrease) Output file size = 12907 bytes (3362 bytes = 20.67% decrease) ** Processing: tmpout/p-chunk50-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10915 bytes Input file size = 11785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9194 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9193 Output IDAT size = 9193 bytes (1722 bytes decrease) Output file size = 9271 bytes (2514 bytes = 21.33% decrease) ** Processing: tmpout/p-chunk65-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9593 bytes Input file size = 10463 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7967 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7946 Output IDAT size = 7946 bytes (1647 bytes decrease) Output file size = 8024 bytes (2439 bytes = 23.31% decrease) ** Processing: tmpout/p-chunk75-1.png 960x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12285 bytes Input file size = 13155 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10613 Output IDAT size = 10613 bytes (1672 bytes decrease) Output file size = 10691 bytes (2464 bytes = 18.73% decrease) ** Processing: tmpout/p-chunk76-1.png 768x768 pixels, 8 bits/pixel, 1 color in palette Reducing image to 1 bit/pixel, 1 color in palette Input IDAT size = 595 bytes Input file size = 688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 95 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 95 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 0 IDAT size = 95 Output IDAT size = 95 bytes (500 bytes decrease) Output file size = 188 bytes (500 bytes = 72.67% decrease) ** Processing: tmpout/p-chunk76-2.png 768x768 pixels, 8 bits/pixel, 14 colors in palette Reducing image to 4 bits/pixel, 14 colors in palette Input IDAT size = 2095 bytes Input file size = 2227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1218 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1218 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 1127 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 1127 Output IDAT size = 1127 bytes (968 bytes decrease) Output file size = 1259 bytes (968 bytes = 43.47% decrease) ** Processing: tmpout/p-chunk76-3.png 768x768 pixels, 8 bits/pixel, 226 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3658 bytes Input file size = 4426 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3214 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 2876 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 2872 Output IDAT size = 2872 bytes (786 bytes decrease) Output file size = 2950 bytes (1476 bytes = 33.35% decrease) ** Processing: tmpout/p-chunk76-4.png 768x768 pixels, 8 bits/pixel, 250 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5284 bytes Input file size = 6124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4519 Output IDAT size = 4519 bytes (765 bytes decrease) Output file size = 4597 bytes (1527 bytes = 24.93% decrease) ** Processing: tmpout/p-chunk76-5.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5439 bytes Input file size = 6288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4659 Output IDAT size = 4659 bytes (780 bytes decrease) Output file size = 4737 bytes (1551 bytes = 24.67% decrease) ** Processing: tmpout/p-chunk76-6.png 768x768 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5599 bytes Input file size = 6448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4780 Output IDAT size = 4780 bytes (819 bytes decrease) Output file size = 4858 bytes (1590 bytes = 24.66% decrease) ** Processing: tmpout/p-chunk76-7.png 768x768 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6561 bytes Input file size = 7413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5755 Output IDAT size = 5755 bytes (806 bytes decrease) Output file size = 5833 bytes (1580 bytes = 21.31% decrease) ** Processing: tmpout/p-chunk76-8.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7667 bytes Input file size = 8522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6694 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6691 Output IDAT size = 6691 bytes (976 bytes decrease) Output file size = 6769 bytes (1753 bytes = 20.57% decrease) ** Processing: tmpout/p-chunk76-9.png 768x768 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8354 bytes Input file size = 9221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7258 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7256 Output IDAT size = 7256 bytes (1098 bytes decrease) Output file size = 7334 bytes (1887 bytes = 20.46% decrease) ** Processing: tmpout/p-chunk76-10.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11109 bytes Input file size = 11979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9801 Output IDAT size = 9801 bytes (1308 bytes decrease) Output file size = 9879 bytes (2100 bytes = 17.53% decrease) ** Processing: tmpout/p-chunk76-11.png 768x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11160 bytes Input file size = 12030 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9840 Output IDAT size = 9840 bytes (1320 bytes decrease) Output file size = 9918 bytes (2112 bytes = 17.56% decrease) --- finished re-building ‘HTML_special_features.Rmd’ --- re-building ‘Rmarkdown.Rmd’ using rmarkdown --- finished re-building ‘Rmarkdown.Rmd’ --- re-building ‘code_chunks.Rmd’ using rmarkdown The magick package is required to crop "tmpout/p-chunk65-1.png" but not available. ** Processing: tmpout/p-chunk65-1.png 288x216 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 2x8 bits/pixel, grayscale+alpha Input IDAT size = 4546 bytes Input file size = 4624 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3115 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2969 Output IDAT size = 2969 bytes (1577 bytes decrease) Output file size = 3047 bytes (1577 bytes = 34.10% decrease) ! Undefined control sequence. l.708 \pandocbounded {\includegraphics[keepaspectratio]{tmpout/p-chunk50-1.... Error: processing vignette 'code_chunks.Rmd' failed with diagnostics: LaTeX failed to compile /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/stationery.Rcheck/vign_test/stationery/vignettes/code_chunks.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See code_chunks.log for more info. --- failed re-building ‘code_chunks.Rmd’ --- re-building ‘stationery.Rnw’ using Sweave --- finished re-building ‘stationery.Rnw’ SUMMARY: processing the following file failed: ‘code_chunks.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64