AiES: Axon Integrity Evaluation System for Microscopy Images
Provides tools for the quantitative analysis of axon integrity in microscopy images. It implements image pre-processing, adaptive thresholding, feature extraction, and support vector machine-based classification to compute indices such as the Axon Integrity Index (AII) and Degeneration Index (DI). The package is designed for reproducible and automated analysis in neuroscience research.
| Version: | 0.99.6 |
| Imports: | EBImage, e1071, stats, fs, data.table |
| Suggests: | utils, stringr, colorspace, dplyr, knitr, tcltk, rstudioapi, svDialogs |
| Published: | 2025-06-06 |
| DOI: | 10.32614/CRAN.package.AiES |
| Author: | Shinji Tokunaga 
[aut, cre],
Masafumi Funakoshi [ctb],
Toshiyuki Araki
[ctb] |
| Maintainer: | Shinji Tokunaga <tokunaga at ncnp.go.jp> |
| BugReports: | https://github.com/BreezyCave/AiES/issues |
| License: | BSD_3_clause + file LICENSE |
| Copyright: | 2025 National Center of Neurology and Psychiatry |
| URL: | https://github.com/BreezyCave/AiES |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | AiES results |
Documentation:
| Reference manual: | AiES.html , AiES.pdf |
| Vignettes: |
AiES Introduction (source, R code) |
Downloads:
| Package source: | AiES_0.99.6.tar.gz |
| Windows binaries: | r-devel: AiES_0.99.6.zip, r-release: AiES_0.99.6.zip, r-oldrel: AiES_0.99.6.zip |
| macOS binaries: | r-release (arm64): AiES_0.99.6.tgz, r-oldrel (arm64): AiES_0.99.6.tgz, r-release (x86_64): AiES_0.99.6.tgz, r-oldrel (x86_64): AiES_0.99.6.tgz |
Linking:
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