## ---- echo=FALSE, results='asis'---------------------------------------------- Feature=c( "Mod1, median [IQR]", "Mod2, median [IQR]", "Mod3, median [IQR]", "Mod4, median [IQR]" , "Mod5, median [IQR]" , "Mod6, median [IQR]", "Mod7, median [IQR]", "Mod8, median [IQR]", "Mod9, median [IQR]", "Mod10, median [IQR]", "Mod11, median [IQR]", "Mod12, median [IQR]", "Mod13, median [IQR]", "Mod14, median [IQR]", "Mod15, median [IQR]") MYC=c( "-2.919 [-3.833 -1.536]", "-2.17 [-2.638 -1.706]","-1.798 [-2.033 -1.215]", "-2.45 [-3.037 -1.381]", "-1.902 [-2.171 -1.425]", "-1.772 [-3.022 -1.119]", "0.886 [-1.181 2.231]" , "-1.674 [-2.485 -0.656]", "1.609 [0.961 2.06]", "-0.84 [-1.956 0.087]", "-0.023 [-0.639 1.15]", "-1.347 [-1.928 -0.681]", "0.757 [-0.717 1.532]", "1.691 [0.59 1.952]" , "0.196 [-1.074 0.842]" ) WT=c("2.938 [2.195 3.563]", "2.237 [1.98 2.478]" , "1.409 [1.015 2.228]" , "2.139 [1.776 2.827]" , "1.688 [1.563 1.941]" , "1.701 [0.742 2.204]", "-0.329 [-1.224 0.379]", "1.248 [0.609 1.995]", "-1.412 [-1.706 -1.203]", "0.8 [-0.148 1.161]" , "-0.583 [-1.229 0.027]", "1.305 [0.711 1.736]" , "-0.004 [-1.003 0.6]" , "-1.389 [-1.662 -0.889]", "0.388 [-0.853 0.638]" ) pvalue=c( "3.66e-05" ,"3.66e-05", "3.66e-05" ,"3.66e-05", "3.66e-05", "2.46e-04", "4.03e-01", "3.84e-04", "4.69e-05", "4.64e-02", "1.75e-01" , "3.66e-05", "5.07e-01", "3.66e-05" ,"7.95e-01") FDR=c( "7.84e-05","7.84e-05", "7.84e-05", "7.84e-05", "7.84e-05", "4.10e-04", "4.64e-01", "5.76e-04", "8.80e-05", "6.33e-02" ,"2.19e-01", "7.84e-05", "5.43e-01", "7.84e-05", "7.95e-01") da=data.frame(Feature=Feature,MYC=MYC,WT=WT,'p-value'=pvalue,FDR=FDR,check.names = FALSE) knitr::kable(da, align = "lcccc") ## ---- echo=FALSE, results='asis'---------------------------------------------- pval=c("1.44e-06","1.21e-05","4.97e-05","1.21e-03","1.31e-03","1.53e-03","1.77e-03", "2.33e-03", "8.62e-03", "1.18e-02", "1.47e-02", "1.91e-02", "2.04e-02", "2.05e-02", "2.32e-02", "2.32e-02", "3.95e-02", "4.13e-02") nam=c( "Histidine or derivatives","Imidazolyl carboxylic acid derivative","Hybrid peptide", "N-acyl-alpha amino acid or derivatives","Imidazole","Azole", "Aromatic heteromonocyclic compound","N-acyl-alpha-amino acid","Beta amino acid or derivatives", "Organoheterocyclic compound","Heteroaromatic compound","Carboximidic acid", "Carboximidic acid derivative","Azacycle","Organic 1,3-dipolar compound", "Propargyl-type 1,3-dipolar organic compound","Alpha-amino acid or derivatives","Amino acid or derivatives" ) da=data.frame(Substituents=nam,'p-value'=pval,check.names = FALSE) knitr::kable(da, align = "lc") ## ---- echo=FALSE, results='asis'---------------------------------------------- pval=c("2.97e-04", "1.38e-03", "8.62e-03", "8.62e-03", "8.62e-03", "2.57e-02") nam=c( "CNDP1","CARNS1", "VIM" , "HSPA1A" , "SLC15A2", "MPO" ) da=data.frame(Substituents=nam,'p-value'=pval,check.names = FALSE) knitr::kable(da, align = "lc")