NGCHM: Next Generation Clustered Heat Maps
Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) <doi:10.12688/f1000research.20590.2> for more details.
| Version: | 1.0.4 |
| Depends: | R (≥ 3.5.0) |
| Imports: | digest, grDevices, htmltools, httr, jsonlite, logger (≥ 0.2.0), methods, stats, tsvio, utils |
| Suggests: | knitr, rmarkdown, Rtsne, testthat, umap, uwot |
| Enhances: | NGCHMDemoData, NGCHMSupportFiles |
| Published: | 2024-12-17 |
| DOI: | 10.32614/CRAN.package.NGCHM |
| Author: | Bradley M Broom 
[aut],
Mary A Rohrdanz [ctb, cre],
Chris Wakefield [ctb],
James M Melott [ctb],
MD Anderson Cancer Center [cph] |
| Maintainer: | Mary A Rohrdanz <marohrdanz at mdanderson.org> |
| License: | GPL-3 |
| URL: | https://md-anderson-bioinformatics.github.io/NGCHM-R/, https://github.com/MD-Anderson-Bioinformatics/NGCHM-R |
| NeedsCompilation: | no |
| SystemRequirements: | Java (>= 11) Git |
| Additional_repositories: | https://md-anderson-bioinformatics.r-universe.dev |
| Materials: | README |
| CRAN checks: | NGCHM results |
Documentation:
| Reference manual: | NGCHM.pdf |
Downloads:
| Package source: | NGCHM_1.0.4.tar.gz |
| Windows binaries: | r-devel: NGCHM_1.0.4.zip, r-release: NGCHM_1.0.4.zip, r-oldrel: NGCHM_1.0.4.zip |
| macOS binaries: | r-release (arm64): NGCHM_1.0.4.tgz, r-oldrel (arm64): NGCHM_1.0.4.tgz, r-release (x86_64): NGCHM_1.0.4.tgz, r-oldrel (x86_64): NGCHM_1.0.4.tgz |
| Old sources: | NGCHM archive |
Linking:
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