bio3d: Biological Structure Analysis
Utilities to process, organize and explore protein structure,
sequence and dynamics data. Features include the ability to read and write
structure, sequence and dynamic trajectory data, perform sequence and structure
database searches, data summaries, atom selection, alignment, superposition,
rigid core identification, clustering, torsion analysis, distance matrix
analysis, structure and sequence conservation analysis, normal mode analysis,
principal component analysis of heterogeneous structure data, and correlation
network analysis from normal mode and molecular dynamics data. In addition,
various utility functions are provided to enable the statistical and graphical
power of the R environment to work with biological sequence and structural data.
Please refer to the URLs below for more information.
| Version: |
2.4-5 |
| Depends: |
R (≥ 3.1.0) |
| Imports: |
Rcpp, parallel, grid, graphics, grDevices, stats, utils |
| LinkingTo: |
Rcpp |
| Suggests: |
XML, RCurl, lattice, ncdf4, igraph, bigmemory, knitr, rmarkdown, testthat (≥ 0.9.1), httr, msa, Biostrings |
| Published: |
2024-10-29 |
| DOI: |
10.32614/CRAN.package.bio3d |
| Author: |
Barry Grant [aut, cre],
Xin-Qiu Yao [aut],
Lars Skjaerven [aut],
Julien Ide [aut] |
| Maintainer: |
Barry Grant <bjgrant at ucsd.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
http://thegrantlab.org/bio3d/,
https://bitbucket.org/Grantlab/bio3d/ |
| NeedsCompilation: |
yes |
| Citation: |
bio3d citation info |
| Materials: |
README NEWS |
| In views: |
Omics |
| CRAN checks: |
bio3d results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
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