## ----include = FALSE---------------------------------------------------------- suggested_dependent_pkgs <- c("dplyr") knitr::opts_chunk$set( collapse = TRUE, comment = "#>", eval = all(vapply( suggested_dependent_pkgs, requireNamespace, logical(1), quietly = TRUE )) ) ## ----echo=FALSE--------------------------------------------------------------- knitr::opts_chunk$set(comment = "#") ## ----------------------------------------------------------------------------- library(dplyr) library(rtables) lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM") %>% split_cols_by("SEX", split_fun = keep_split_levels(c("F", "M"))) %>% analyze("AGE") tbl <- build_table(lyt, ex_adsl) tbl ## ----------------------------------------------------------------------------- col_counts(tbl) <- c(17, 18, 19, 17, 18, 19) tbl ## ----------------------------------------------------------------------------- col_counts(tbl) <- c(17, 18, NA, 17, 18, 19) tbl ## ----------------------------------------------------------------------------- lyt2 <- basic_table() %>% split_cols_by("ARM") %>% split_cols_by("SEX", split_fun = keep_split_levels(c("F", "M")), show_colcounts = TRUE ) %>% analyze("AGE") tbl2 <- build_table(lyt2, ex_adsl) tbl2 ## ----------------------------------------------------------------------------- lyt3 <- basic_table() %>% split_cols_by("ARM", show_colcounts = TRUE) %>% split_cols_by("SEX", split_fun = keep_split_levels(c("F", "M"))) %>% analyze("AGE") tbl3 <- build_table(lyt3, ex_adsl) tbl3 ## ----------------------------------------------------------------------------- facet_colcount(tbl3, c("ARM", "C: Combination")) ## ----------------------------------------------------------------------------- facet_colcount(tbl3, c("ARM", "C: Combination")) <- 75 tbl3 ## ----------------------------------------------------------------------------- facet_colcounts_visible(tbl3, c("ARM", "A: Drug X", "SEX")) <- TRUE tbl3 ## ----eval = FALSE------------------------------------------------------------- # ## BEWARE, the following is expected to show error # tbl4 <- tbl3 # colcount_visible(tbl4, c("ARM", "A: Drug X", "SEX", "F")) <- FALSE # tbl4 # # # Expected Error message # # Error in h(simpleError(msg, call)) : # # error in evaluating the argument 'x' in selecting a method for function 'toString': # # Detected different colcount visibility among sibling facets (those arising from the # # same split_cols_by* layout instruction). This is not supported. # # Set count values to NA if you want a blank space to appear as the displayed count for particular facets. # # First disagreement occured at paths: # # ARM[A: Drug X]->SEX[F] # # ARM[A: Drug X]->SEX[M] ## ----------------------------------------------------------------------------- coldf <- make_col_df(tbl3) facet_colcount(tbl3, coldf$path[[1]][c(1, 2)]) <- NA_integer_ print(tbl3) # Keeps the missing space colcount_na_str(tbl3) <- "NaN" tbl3 # Shows NaN