commit fa9b5edfa012b710103214634e9685475fa642b2 Author: Benjamin Hofner Release stabs 0.6-4 commit fd382c7899b10e6cb0939202000150f98a6ecef2 Author: Benjamin Hofner Removed all code dependent on QUIC as QUIC was archived on CRAN. commit 23b59b0b82cb8d833d8287478a891f31eed0276a Author: Benjamin Hofner fixed type and clarified default commit 84c889961b8ec5e5375c60b0881ba3bbbb5728d7 Author: Benjamin Hofner added tests for (stratified) subsampling commit a30766a218d57ce92712772f1110f86f05f2c9df Author: Benjamin Hofner Release stabs 0.6-3 commit e241e39f6db5a5248b2e189e8ebf35cbc3cb2829 Author: Benjamin Hofner Removed link to R-forge and added missing bracket commit 34ab438237f607bc88486c15b5daedbe670947bd Author: Benjamin Hofner Start release candidate commit 9c319fc7606c5103db0fb5b38418eb1f9e82904d Author: Benjamin Hofner Updated inst/CITATION commit d0c252d102ee8655bab164bef88e203d3abb2cd4 Author: Benjamin Hofner make vignettes conditional on suggested packages (closes #24) commit 95450a00c221d9e4cce398d2b34be79ce74142c1 Author: Benjamin Hofner load pre-saved data to avoid platform specific differences in ranomization (issue of huge.generator) commit ee23187be488779dae47b728d1e14c3b7d01a793 Author: Benjamin Hofner try to fix failing test on appveyor commit 9da6060076ae13561b8e84e2293a02ca84e53704 Author: Benjamin Hofner fixed typo in NEWS.Rd commit d18e554f81eb948430c5ef6ad4467de9c4c41bcf Author: Benjamin Hofner Relase stabs 0.6-2 commit 43b7783c9cf416c20df9ad8ad010681dfaefed91 Author: Benjamin Hofner add donttest to speed up check time on CRAN commit a7c01c65035e315b0871bc4818b493576b8c14a0 Author: Benjamin Hofner Update .Rout.save of examples commit 46253d4651155a940067da4f2de9cddb98bab4b9 Author: Benjamin Hofner Suppress warning of glmnet commit 36d0f06f56aba198630e916a923a6b2042581a19 Author: Benjamin Hofner Update .Rout.save files commit 694920aab2558e1c4b5197152fd41b9c603fc8ba Author: Benjamin Hofner fix conditions in tests commit 54c2fc33d679f753766ce617195765019eca21c7 Author: Benjamin Hofner Use markup \doi for DOIs in manuals commit 1e89301e99989e34308160b26400430231353531 Author: Benjamin Hofner Make tests really conditional on TH.data and other packages commit 8f3361e6554d7df692915b97e38325f45423b09a Author: Benjamin Hofner Updated README and vignette commit 3a629a679b2c4c2e243d98b3956341f49510c619 Author: Benjamin Hofner Added DOIs to \file{DESCRIPTION} to fulfill CRAN policies. Release stabs 0.6-1 commit 9bc3696e66252d9713f8007716b5f8876baccc87 Author: Benjamin Hofner Release stabs 0.6-0 commit 3a7c1448c29022d1fb4cb99bf193fadefd54e391 Author: Benjamin Hofner Updated graphical models vignette commit 6736a84f6818ee4a89c30a7324ebfff11a1a782c Author: Benjamin Hofner Make CRAN happy and fix some typos commit aec9b67b9b94d6d6c3a83e99e2e73c01d93f1be9 Author: Benjamin Hofner Updated affiliation commit 46f45c916d93871fa4b2b2c925d76a18972cd6b4 Author: Benjamin Hofner Coding issues commit 6c29a482ac929afa8901738207c901249781429e Author: Benjamin Hofner Update README.md and add to package commit 05cffb1f8f2c2aeadb8710bf3ee2703c7d7dcea8 Author: Benjamin Hofner Include vignette for basic usage commit fc76322f36c1ccab6a154bcfb399e98cd172109a Author: Benjamin Hofner Updated vignette for graphical models (previously broken) commit a4ea8e86b9a4070f3f4b470e5177d6b7c0e71a77 Author: Benjamin Hofner Start preparing release candidate 0.6-0 commit 985772a0a9c3dfd21c5c300b2cafe39676f3ba92 Author: Benjamin Hofner Updated manual for QUIC based fitter commit 7c7b30a8b309d1098983a6811968db0cf3870134 Author: Benjamin Hofner add R repository commit e4cde5471f5893eb303c4df065abdfec8cc8dc18 Author: Benjamin Hofner Do not treat warnings as errors commit 37d07a2e01cd4418e7ed4ba188f0ebdfc608fcf9 Author: Benjamin Hofner Update NEWS.Rd commit eaa3b49bd196eac26e56e55faa3be32f5df65f5d Author: Benjamin Hofner make sure that per default glmnet.lasso selects at maximum q variables (fixes #23) commit aad604a7ba862da822e023f35f5b9a647fa79068 Author: Benjamin Hofner .Rbuildignore commit 73f715f316641eb79e8d57c3a4bb9af40ed06479 Author: Benjamin Hofner added missing } commit 8a8e31e89c32e8699516aeaf410e97ef65434181 Author: Benjamin Hofner improved manuals commit 8ea27b7e86d44c6270729874d20978a6bbe986ee Author: Benjamin Hofner specification of lambda not permitted for glmnet.lasso commit 626e4ec9691c999ef4b18286c5a9440a4d8516dd Author: Benjamin Hofner allow returned object of fit.fun to contain only a slot selected (path is optional) commit ac209e8d335cd95376368bac512fa1dd6d100af9 Merge: e07546f 61b47ea Author: Benjamin Hofner Merge pull request #17 from andreyto/at_run_stabsel__check commit e07546f446de364dcbdc26881e6306223925f264 Merge: c28d5af af88570 Author: Benjamin Hofner Merge pull request #19 from gokceneraslan/patch-1 commit af885703e699061ee63a6f612f84c8374325df45 Author: Gökçen Eraslan Make fitfuns more quiet commit 61b47ead827d1a6dae6cfaceaab2a48feab9e14c Author: Andrey Tovchigrechko Fix error True/False is expected but vector is received in assertion commit c28d5af4ad311ae8e4ff6927ef0a1a0eca3f087c Author: Benjamin Hofner Update DESCRIPTION commit 38f7be0ed53af4c111d94b2151be567d697534f2 Merge: 558809a 947cc95 Author: Benjamin Hofner Merge pull request #15 from richardbeare/TestFixes commit 947cc9527b60770429329de7e841208971f4afc5 Author: Richard Beare rmarkdown as a dependency commit 558809acbc1eb81df8e1506e67c1c879f0e2ea05 Author: Benjamin Hofner Added QUIC to installed packages (on CI) commit e2ec134e163aa6d6ae1db0786c583c9087a9b227 Merge: 39e608f 954c5f5 Author: Benjamin Hofner Merge branch 'richardbeare-GraphTrialsB' commit 39e608feed47d79994f2e5b49220a80baeb147e9 Author: Benjamin Hofner additionally install "enhanced" packages on travis-ci and appveyor commit b15cb097d3bb0228ce5512c6bae058b8e10898fc Author: Benjamin Hofner Updated travis.ci commit 954c5f5e6359d45f69ef43fe95c87cd1877538cc Author: Benjamin Hofner Revert .travis.yml commit a7d65e0b4d5c0daa0d1c1b35901700096e931e77 Author: Benjamin Hofner tests for QUIC must be conditional commit 228922b0f5d7e18046735369c586ca011cc13fe2 Author: Benjamin Hofner changed source of mboost and gamboostLSS commit 348d8d6984395e999b5d2daa023618b69bfc0962 Author: Benjamin Hofner load QUIC in tests commit 9085cf00d36d125cd0890f668b206954273def4e Author: Benjamin Hofner Fixed documentation commit 8d592778e428ca3522b3e3ed972717571afa810f Author: Benjamin Hofner clean up description commit d79ad9a25824202ea3d0d772ae4e3952f4d436ee Author: Benjamin Hofner reverted unnecessary changes and reindented lines commit 834c6d021341fdeffe6c76dd1e3362a064096b55 Author: Richard Beare Second pass at support for graphical models in stabs, with commits squashed commit 3bbecfa81b413469b921796e3356882779a0c35d Author: Benjamin Hofner fix citation; closes #9 commit 481f71158116f35a6498ba41f6f09d1a1a4daeb8 Author: Benjamin Hofner replace base-learners with effects; closes #10 commit 4d0d759461fff47b77c8f021a6f203eecc400a86 Author: Benjamin Hofner Forward graphical parameters to y-axis labels commit b749668614bbe395f63089da830ca1d90b71f2ab Author: Benjamin Hofner Add test for new error handling commit 7c00ec4d7e79a4a59ea9b8d65cab106213f189ee Author: Benjamin Hofner Better solution to continue stabsel after errors in folds; Fixes #2 commit c55d0159b1fb96fc9acc76eb2f236a153db3e09c Author: Benjamin Hofner Updated REAMDE.md commit 064bd7998e244ef800af4a6b403defb7d11524bb Author: Benjamin Hofner Updated REAMDE.md commit 7b65b0fd30506d88ad4b8685b4bc41a649bb94f9 Author: Benjamin Hofner Fixed plot.stabsel if data is given as unnamed matrix; Fixes #6 commit ddd88e19752bbfe3aa5de6c60cd6bdbefba8eaa6 Author: Benjamin Hofner fix newly introduced bug commit 68df6c43906ed5345f3aadbecfc275adc0a6bc43 Author: Benjamin Hofner Fix issue when variables are dropped again from active set; Fixes #5 commit d79b001c28b12f91fa23442c818edb7ecbbbd244 Author: Benjamin Hofner Improved determination of q; Fixes #7 commit c122889a74f3b29a609bf3b6b0575a285b8daddd Author: Benjamin Hofner Travis-CI: Install covr commit ab3a1aad382b0d332f2cedeaed9796a441adaafc Author: Benjamin Hofner Add coverage status badge commit ccb68645db77bd1b8e0b90cd40c506c0b728a98e Author: Benjamin Hofner Calculate coverage commit 0874e5d7c0bd935a18b60700b6291186779428e8 Author: Benjamin Hofner Improved documentation of glmnet.lasso_maxCoef commit b147e782a96e61c8e08e24d11630109a6c724dde Author: Benjamin Hofner Added example for glmnet (closes #4) commit 84a59f9334bf633d632701bd24888d0e7d0aab03 Author: Benjamin Hofner CI: Start using AppVeyor for Windows checks/builds commit f29ce60cc7c4f756665b347ee2b89cc16d652199 Author: Benjamin Hofner Update README.md commit 6dd85f96788105493755304f999b90cb19ea71c7 Author: Benjamin Hofner Updated NEWS.Rd and increased version number commit f4512c588aca696d0a43fe1b5d456a8b5ddf2fb5 Author: Benjamin Hofner Removed empty lines from DESCRIPTION commit c8564fff20656b37be0833f294572b16eff38e0b Author: Benjamin Hofner Update README.md commit c3fb7b05ff824a930e1f7066ef389d21521b8c2c Author: Benjamin Hofner Updated README.md to contain example code and help on how to add own variable selection procedures commit 2fda69f99cb6510856734bc92ce36df681cc1f19 Author: Benjamin Hofner Updated DESCRIPTION to be more informative commit 29e7efd89d1fb5b3bb241f669f2a8df1fcefd901 Author: Benjamin Hofner Adhere to CRAN policies regarding import of base packages (closes #3) commit d788dd61b2df450f3c6d260eff406fbae84b9605 Author: Benjamin Hofner boosting specific changes: warn if mstop is to small commit 1ed947a740ab19e036bdf83159c6cf0dad2aac66 Author: Benjamin Hofner Updated references: Hofner et al now available at BMC Bioinformatics commit d4852a7165e972ebe7d25a2a523efdb5e979a02c Author: Benjamin Hofner Update README.md commit 3d88f8d2583f1ba4a96276371c63be26e4ccbd09 Author: Benjamin Hofner updated NEWS.Rd commit 4017a3957d64557e1a44794c77104532abd3fc91 Author: Benjamin Hofner export check_folds() commit 77efcc84408eafae272b5b712bf4f132ac17801e Author: Benjamin Hofner (stabsel) continue computations even if errors in single folds occure. [fixes issue #2] commit d81c3d78729a3c2680191652fce1f3bb90beeb87 Author: Benjamin Hofner (stabsel) added mc.preschedule = FALSE [closes issue #1] commit 91e5e0b46ecb5a55d1b0868731efa41d9a9ac278 Author: Benjamin Hofner fixed some issues in stabsel.stabsel method commit 953d5738b19d771130bc1eb003068e54922fbebd Author: Benjamin Hofner improved print.stabsel method commit a0529bc8b59c1dc45633ecc556f77b05c853c197 Author: Benjamin Hofner DESCRIPTION: make package "Description:" a sentence commit a1cf150846c63df2259726d99144db63ceb0d73b Author: Benjamin Hofner fixed typo, added example commit 1545c1276a45e0b07f6dd3640e8cdf5971c60dec Author: Benjamin Hofner Release stabs 0.5-1 commit 5f3a2c4cc42083756af599b3b1f22be276728164 Author: Benjamin Hofner updated release SOPs commit 75f8092d418328b87c23d89a0172ca52f7ae5de2 Author: Benjamin Hofner use requireNamespace instead of require commit 82a0287b56d8e9dc185b8ee5a6ca4f8a6944e91a Author: Benjamin Hofner updated NEWS.Rd commit 7f5e2246cb170293fe3a7b5acb283bfa00d0ebb5 Author: Benjamin Hofner changed CITATION to make CRAN happy commit 5964fe07b3426ac4df12f2aa14e5a45b12960b07 Author: Benjamin Hofner Updated SOPs to reflect changed project structure Updated .Rbuildignore and .RbuildignoreCRAN commit 7e6de04ab60ea543ffa57f4086cc735cd4b4f06f Author: Benjamin Hofner Updated check results (.Rout.save) commit 6a41a675d9dfe88cb27a84c71d04cedd295bf61a Author: Benjamin Hofner Updated to stabs 0.5-0 - updated NEWS.Rd to incorporate latest changes - updated ChangeLog - updated SOPs for package release commit d2f52806c51cebc30269c100f24a5b3b2a778b2d Author: Benjamin Hofner updated .Rbuildignore commit 5ba43d90a2a7bc75d72d22af2ac835f79fd22bfb Author: Benjamin Hofner Update .travis.yml commit 776a09d358971e7697443e0678f95bc43945cb0e Merge: eaaff61 af789f8 Author: Benjamin Hofner Merge branch 'master' of github.com:hofnerb/stabs commit eaaff618706f006c3b23ec087a58607ac26524db Author: Benjamin Hofner make tests conditional on availability of packages commit af789f84a615ec0e353f7814ba53bdd857dac127 Author: Benjamin Hofner Update .travis.yml commit 14dab048a34fd5821a95eb6706f3e1bc69208b05 Author: Benjamin Hofner Update .travis.yml commit 53f6fed009f57cdfa0aa0678d8d40553bf28ead4 Author: Benjamin Hofner updated .Rbuildignore commit a22c9e644d3b70b21af6d8d097c8d910d3e4f8d8 Author: Benjamin Hofner added README.md commit 40b090a5851d754fee3ec32c8cbe6cf9b42684b5 Author: Benjamin Hofner use Travis-CI - added travis.yml - modified .Rbuildignore commit d97570a5fb52b285b3deb4db88d4ae0b9c02beb4 Author: Benjamin Hofner moved pkg/ to root folder commit 764a0e5bcb367b920a14805eb68838b0d9b044b4 Author: Benjamin Hofner - added functionality to extract parameters from fitted stabsel object: use parameters() or stabsel_parameters() - tweaked print methods a bit - added specifiedPFER to stabsel and stabsel_parameter objects commit 7177021c4291994ee1e8ccead0815482ebc33819 Author: Benjamin Hofner - fixed bug in stabsel.stabsel (call was not properly corrected) commit 2d4a6439aa8d6ebe58cc014d13be2c9b1129a7fa Author: Benjamin Hofner - added the function stabsel.stabsel to compute (new) parameter combinations for a fitted stabsel object commit c84111adabb28df4c232dbfe8f4867e8c8b3729a Author: Benjamin Hofner - moved selected method from mboost to stabs - added method selected.stabsel commit 8f1f35d3291d15cf7b0a9813b271179d412fcd24 Author: Benjamin Hofner updated .Rout.save files commit 21b18f6884f4c05734abddc0a7c46e05ce6a6b78 Author: Benjamin Hofner - added reference to stability selection paper - added CITATION file commit f5761b259ebe4699fd3cf00b74005c397cfa7c4e Author: Benjamin Hofner Added output that states the significance level commit b12ed7a037fdc55caf5f969fc9c480e096982346 Author: Benjamin Hofner - added new lasso based fit function where the q strongest predictors (according to the coefficient size) are selected. commit 9efc6d915feead904286477fc0989025b55df350 Author: Benjamin Hofner - changed output from "base-learner" to "variable" commit 3103fe80b35b4ccd860bcb7de6bd660de1a8525f Author: Benjamin Hofner - added manual for run_stabsel() - changed regtest-inference.R - fixed manual of stabsel_parameters() commit dbd6cd2caf68550c5192b62af3eecbdb546259ac Author: Benjamin Hofner - exported run_stabsel to make it accessible by other packages - stabs now supports gamboostLSS commit 36b94379f3ef1acde2341f648115068b7da599da Author: Benjamin Hofner - Release Version 0.1-0 - added .Rbuildignore and .RbuildignoreCRAN commit 8faed3ba18fc720ce2be56090114752973997a08 Author: Benjamin Hofner - added manual for subsample() - added inst/NEWS.Rd and ChangeLog - updated DESCRIPTION - add Release SOPs and some helper files commit 22a7392a9ccc49e2fbdbd36239815f4ec99bdb1c Author: Benjamin Hofner - added parallel to NAMESPACE commit f5d61b4bfbed0e28d262cb6cd9ea21f7aef29017 Author: Benjamin Hofner -updated manual commit 7e885b839220c67715621dc85862b71e1b203215 Author: Benjamin Hofner - added stability paths to fitted model - added subsampling method (no longer rely on mboost) - added x- and y-labs to plot plot function - changed default fitting function to lars.lasso - explicitly specify packages for fit function via pkg::function - moved all packages that can be used with stabs to "Enhances:" - export print.stabsel commit 19d2fb9b73eea6c38a5ece5ec3ffe1620fd7a6ed Author: Benjamin Hofner - added args.fitfun to specify further arguments to the fitter - started formula interface commit 1ac5eb756acdecc587fd3eaec768b746ce7e6219 Author: Benjamin Hofner Initial version of package "stabs" which currently implements: - a function stabsel.matrix() to fit Lasso and stepwise models directly with stability selection - a function stabsel.mboost() to apply stability selection to a fitted boosting model - a function stabsel_parameters() to compute the error bounds of stability selection Additionally, print and plot functions are implemented.