CRAN Package Check Results for Maintainer Martin R. Smith <martin.smith at durham.ac.uk>

CRAN Package Check Results for Maintainer ‘Martin R. Smith <martin.smith at durham.ac.uk>’

Last updated on 2024-07-12 15:53:21 CEST.

Package	NOTE	OK
CongreveLamsdell2016		13
PlotTools		13
Quartet		13
Rogue		13
TBRDist	13
Ternary	8	5
TotalCopheneticIndex		13
TreeDist	13
TreeSearch	7	6
TreeTools	5	8

Package Quartet

Current CRAN status: OK: 13

Package Rogue

Current CRAN status: OK: 13

Package TBRDist

Current CRAN status: NOTE: 13

Version: 1.0.2
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: libs 5.1Mb Flavor: r-oldrel-macos-arm64

Package Ternary

Current CRAN status: NOTE: 8, OK: 5

Version: 2.3.1
Check: installed package size
Result: NOTE installed size is 7.0Mb sub-directories of 1Mb or more: doc 5.9Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: ColourTernary.Rd: SpectrumLegend TernaryContour.Rd: SpectrumLegend Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Package TotalCopheneticIndex

Current CRAN status: OK: 13

Package TreeDist

Current CRAN status: NOTE: 13

Version: 2.7.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TreeDistData’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.7.0
Check: installed package size
Result: NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 5.0Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TreeSearch

Current CRAN status: NOTE: 7, OK: 6

Version: 1.5.1
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 1.0Mb Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.5.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AdditionTree.Rd: ImposeConstraint AllSPR.Rd: phylo CharacterLength.Rd: phylo ConcordantInformation.Rd: phylo Consistency.Rd: phylo DoubleNNI.Rd: phylo JackLabels.Rd: phylo Jackknife.Rd: phylo MaximizeParsimony.Rd: phylo, ImposeConstraint MorphyTreeLength.Rd: RenumberTips, phylo NNI.Rd: phylo PlotCharacter.Rd: phylo Ratchet.Rd: phylo RearrangeEdges.Rd: phylo SPR.Rd: phylo SiteConcordance.Rd: phylo StopUnlessBifurcating.Rd: phylo SuccessiveApproximations.Rd: phylo TBR.Rd: phylo TBRWarning.Rd: phylo TaxonInfluence.Rd: ClusteringInfoDistance, write.nexus, path_sanitize TreeSearch.Rd: phylo cSPR.Rd: phylo dot-NonDuplicateRoot.Rd: phylo inapplicable.datasets.Rd: read.nexus.data Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Package TreeTools

Current CRAN status: NOTE: 5, OK: 8

Version: 1.11.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AddTip.Rd: bind.tree AncestorEdge.Rd: phylo DescendantEdges.Rd: phylo EdgeAncestry.Rd: phylo ListAncestors.Rd: phylo Neworder.Rd: phylo ReadCharacters.Rd: read.nexus.data Reorder.Rd: phylo Subtree.Rd: phylo, extract.clade TipLabels.Rd: rtree TreeShape.Rd: addMemoization sapply64.Rd: bit64-package Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Version: 1.11.1
Check: installed package size
Result: NOTE installed size is 5.5Mb sub-directories of 1Mb or more: R 1.1Mb libs 3.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64